在Windows下编译RInside示例时出错
Error with compiling RInside examples under Windows
我目前正在尝试使用RInside在回测中做一些情节，灵感来自RInside和Rcpp的保存点阵图。我在编译RInside时遇到了问题。在深入研究我的问题之前，我已经查了前面的三个问题:
-
在Windows下编译RInside示例的问题;
-
在Windows上编译RInside程序
但这并不能解决我的问题。按照标准步骤，我安装了最新的RInside包，并执行下载的RInside二进制文件中包含的以下makefile Makefile.win:
## -*- mode: makefile; tab-width: 8; -*-
##
## Simple Makefile for Windows
##
## Note that the libRInside library encodes the value of R_HOME found
## at compilation. So if you use the CRAN package of RInside, its value
## may not correspond to where you have R installed. One quick fix is
## export the appropriate value of R_HOME, eg ony my work machine
## set R_HOME=C:optR-current
## The other is to re-install RInside from source on your machine.
## Either one should allow you to actually run the binaries created
## with this Makefile
## This version is fairly directly derived from the Unix versions
## You may have to set R_HOME manually if this does not work
## It requires Rtools in the path -- as does all R package building
#R_HOME := $(shell R RHOME | sed -e "s|\\|/|g")
R_HOME := "C:/R/R-3.1.3"
## You may have to set this to one of the two values below to enforce a particular
## architecture in case the autodetection in the next line does not work correctly
##R_ARCH := --arch $(shell echo 'cat(.Platform$$r_arch)' | R --vanilla --slave)
##R_ARCH := --arch i386
R_ARCH := --arch x64
## You may need to set R_LIBS_USER if Rcpp or RInside are installed where R does not see them by default
R_LIBS_USER := "C:/R/R-3.1.3/library"
sources := $(wildcard *.cpp)
programs := $(sources:.cpp=)
## include headers and libraries for R
RCPPFLAGS := $(shell $(R_HOME)/bin/R $(R_ARCH) CMD config --cppflags)
RLDFLAGS := $(shell $(R_HOME)/bin/R $(R_ARCH) CMD config --ldflags)
RBLAS := $(shell $(R_HOME)/bin/R $(R_ARCH) CMD config BLAS_LIBS)
RLAPACK := $(shell $(R_HOME)/bin/R $(R_ARCH) CMD config LAPACK_LIBS)
## include headers and libraries for Rcpp interface classes
RCPPINCL := $(shell echo 'Rcpp:::CxxFlags()' | $(R_HOME)/bin/R $(R_ARCH) --vanilla --slave)
RCPPLIBS := $(shell echo 'Rcpp:::LdFlags()' | $(R_HOME)/bin/R $(R_ARCH) --vanilla --slave)
## include headers and libraries for RInside embedding classes
RINSIDEINCL := $(shell echo 'RInside:::CxxFlags()' | $(R_HOME)/bin/R $(R_ARCH) --vanilla --slave)
RINSIDELIBS := $(shell echo 'RInside:::LdFlags()' | $(R_HOME)/bin/R $(R_ARCH) --vanilla --slave)
## compiler etc settings used in default make rules
CXX := $(shell $(R_HOME)/bin/R $(R_ARCH) CMD config CXX)
CPPFLAGS := -Wall $(shell $(R_HOME)/bin/R $(R_ARCH) CMD config CPPFLAGS)
CXXFLAGS := $(RCPPFLAGS) $(RCPPINCL) $(RINSIDEINCL) $(shell $(R_HOME)/bin/R $(R_ARCH) CMD config CXXFLAGS)
LDFLAGS = -s
LDLIBS := $(RLDFLAGS) $(RBLAS) $(RLAPACK) $(RINSIDELIBS) $(RCPPLIBS)
CC := $(shell $(R_HOME)/bin/R $(R_ARCH) CMD config CXX)
all : $(programs)
clean:
rm -vf $(programs)
checkR:
echo "R is at $(R_HOME)"
我在Makefile中所做的更改。为了使其可执行R_HOME := "C:/R/R-3.1.3", R_LIBS_USER := "C:/R/R-3.1.3/library", R_ARCH := --arch x64，并遵循在Windows的想法下编译RInside示例的问题，我将RProfile.site更改为:
# Things you might want to change
# options(papersize="a4")
# options(editor="notepad")
# options(pager="internal")
# set the default help type
# options(help_type="text")
options(help_type="html")
# set a site library
.Library.site <- file.path("C:/R/R-3.1.3/library")
# set a CRAN mirror
# local({r <- getOption("repos")
# r["CRAN"] <- "http://my.local.cran"
# options(repos=r)})
# Give a fortune cookie, but only to interactive sessions
# (This would need the fortunes package to be installed.)
# if (interactive())
# fortunes::fortune()
运行make -f Marfile.win，我将cmd复制为:
c:RR-3.1.3libraryRInsideexamplesstandard>make -f Makefile.win
g++ -m64 -IC:/R/R-3.1.3/include -IC:/R/R-3.1.3/include/x64 -IC:/R/R-3.1.3/librar
y/Rcpp/include -IC:/R/R-3.1.3/library/RInside/include -O2 -Wall -mtune=core2 -Wa
ll -s rinside_callbacks0.cpp -LC:/R/R-3.1.3/bin/x64 -lR -lm -LC:/R/R-3.1.3/
bin/x64 -lRblas -LC:/R/R-3.1.3/bin/x64 -lRlapack "C:/R/R-3.1.3/library/RInside/l
ib/x64/libRInside.a" -o rinside_callbacks0
g++ -m64 -IC:/R/R-3.1.3/include -IC:/R/R-3.1.3/include/x64 -IC:/R/R-3.1.3/librar
y/Rcpp/include -IC:/R/R-3.1.3/library/RInside/include -O2 -Wall -mtune=core2 -Wa
ll -s rinside_callbacks1.cpp -LC:/R/R-3.1.3/bin/x64 -lR -lm -LC:/R/R-3.1.3/
bin/x64 -lRblas -LC:/R/R-3.1.3/bin/x64 -lRlapack "C:/R/R-3.1.3/library/RInside/l
ib/x64/libRInside.a" -o rinside_callbacks1
g++ -m64 -IC:/R/R-3.1.3/include -IC:/R/R-3.1.3/include/x64 -IC:/R/R-3.1.3/librar
y/Rcpp/include -IC:/R/R-3.1.3/library/RInside/include -O2 -Wall -mtune=core2 -Wa
ll -s rinside_module_sample0.cpp -LC:/R/R-3.1.3/bin/x64 -lR -lm -LC:/R/R-3.
1.3/bin/x64 -lRblas -LC:/R/R-3.1.3/bin/x64 -lRlapack "C:/R/R-3.1.3/library/RInsi
de/lib/x64/libRInside.a" -o rinside_module_sample0
g++ -m64 -IC:/R/R-3.1.3/include -IC:/R/R-3.1.3/include/x64 -IC:/R/R-3.1.3/librar
y/Rcpp/include -IC:/R/R-3.1.3/library/RInside/include -O2 -Wall -mtune=core2 -Wa
ll -s rinside_sample0.cpp -LC:/R/R-3.1.3/bin/x64 -lR -lm -LC:/R/R-3.1.3/bin
/x64 -lRblas -LC:/R/R-3.1.3/bin/x64 -lRlapack "C:/R/R-3.1.3/library/RInside/lib/
x64/libRInside.a" -o rinside_sample0
g++ -m64 -IC:/R/R-3.1.3/include -IC:/R/R-3.1.3/include/x64 -IC:/R/R-3.1.3/librar
y/Rcpp/include -IC:/R/R-3.1.3/library/RInside/include -O2 -Wall -mtune=core2 -Wa
ll -s rinside_sample1.cpp -LC:/R/R-3.1.3/bin/x64 -lR -lm -LC:/R/R-3.1.3/bin
/x64 -lRblas -LC:/R/R-3.1.3/bin/x64 -lRlapack "C:/R/R-3.1.3/library/RInside/lib/
x64/libRInside.a" -o rinside_sample1
g++ -m64 -IC:/R/R-3.1.3/include -IC:/R/R-3.1.3/include/x64 -IC:/R/R-3.1.3/librar
y/Rcpp/include -IC:/R/R-3.1.3/library/RInside/include -O2 -Wall -mtune=core2 -Wa
ll -s rinside_sample10.cpp -LC:/R/R-3.1.3/bin/x64 -lR -lm -LC:/R/R-3.1.3/bi
n/x64 -lRblas -LC:/R/R-3.1.3/bin/x64 -lRlapack "C:/R/R-3.1.3/library/RInside/lib
/x64/libRInside.a" -o rinside_sample10
g++ -m64 -IC:/R/R-3.1.3/include -IC:/R/R-3.1.3/include/x64 -IC:/R/R-3.1.3/librar
y/Rcpp/include -IC:/R/R-3.1.3/library/RInside/include -O2 -Wall -mtune=core2 -Wa
ll -s rinside_sample11.cpp -LC:/R/R-3.1.3/bin/x64 -lR -lm -LC:/R/R-3.1.3/bi
n/x64 -lRblas -LC:/R/R-3.1.3/bin/x64 -lRlapack "C:/R/R-3.1.3/library/RInside/lib
/x64/libRInside.a" -o rinside_sample11
g++ -m64 -IC:/R/R-3.1.3/include -IC:/R/R-3.1.3/include/x64 -IC:/R/R-3.1.3/librar
y/Rcpp/include -IC:/R/R-3.1.3/library/RInside/include -O2 -Wall -mtune=core2 -Wa
ll -s rinside_sample12.cpp -LC:/R/R-3.1.3/bin/x64 -lR -lm -LC:/R/R-3.1.3/bi
n/x64 -lRblas -LC:/R/R-3.1.3/bin/x64 -lRlapack "C:/R/R-3.1.3/library/RInside/lib
/x64/libRInside.a" -o rinside_sample12
g++ -m64 -IC:/R/R-3.1.3/include -IC:/R/R-3.1.3/include/x64 -IC:/R/R-3.1.3/librar
y/Rcpp/include -IC:/R/R-3.1.3/library/RInside/include -O2 -Wall -mtune=core2 -Wa
ll -s rinside_sample13.cpp -LC:/R/R-3.1.3/bin/x64 -lR -lm -LC:/R/R-3.1.3/bi
n/x64 -lRblas -LC:/R/R-3.1.3/bin/x64 -lRlapack "C:/R/R-3.1.3/library/RInside/lib
/x64/libRInside.a" -o rinside_sample13
g++ -m64 -IC:/R/R-3.1.3/include -IC:/R/R-3.1.3/include/x64 -IC:/R/R-3.1.3/librar
y/Rcpp/include -IC:/R/R-3.1.3/library/RInside/include -O2 -Wall -mtune=core2 -Wa
ll -s rinside_sample14.cpp -LC:/R/R-3.1.3/bin/x64 -lR -lm -LC:/R/R-3.1.3/bi
n/x64 -lRblas -LC:/R/R-3.1.3/bin/x64 -lRlapack "C:/R/R-3.1.3/library/RInside/lib
/x64/libRInside.a" -o rinside_sample14
g++ -m64 -IC:/R/R-3.1.3/include -IC:/R/R-3.1.3/include/x64 -IC:/R/R-3.1.3/librar
y/Rcpp/include -IC:/R/R-3.1.3/library/RInside/include -O2 -Wall -mtune=core2 -Wa
ll -s rinside_sample15.cpp -LC:/R/R-3.1.3/bin/x64 -lR -lm -LC:/R/R-3.1.3/bi
n/x64 -lRblas -LC:/R/R-3.1.3/bin/x64 -lRlapack "C:/R/R-3.1.3/library/RInside/lib
/x64/libRInside.a" -o rinside_sample15
g++ -m64 -IC:/R/R-3.1.3/include -IC:/R/R-3.1.3/include/x64 -IC:/R/R-3.1.3/librar
y/Rcpp/include -IC:/R/R-3.1.3/library/RInside/include -O2 -Wall -mtune=core2 -Wa
ll -s rinside_sample16.cpp -LC:/R/R-3.1.3/bin/x64 -lR -lm -LC:/R/R-3.1.3/bi
n/x64 -lRblas -LC:/R/R-3.1.3/bin/x64 -lRlapack "C:/R/R-3.1.3/library/RInside/lib
/x64/libRInside.a" -o rinside_sample16
g++ -m64 -IC:/R/R-3.1.3/include -IC:/R/R-3.1.3/include/x64 -IC:/R/R-3.1.3/librar
y/Rcpp/include -IC:/R/R-3.1.3/library/RInside/include -O2 -Wall -mtune=core2 -Wa
ll -s rinside_sample17.cpp -LC:/R/R-3.1.3/bin/x64 -lR -lm -LC:/R/R-3.1.3/bi
n/x64 -lRblas -LC:/R/R-3.1.3/bin/x64 -lRlapack "C:/R/R-3.1.3/library/RInside/lib
/x64/libRInside.a" -o rinside_sample17
C:/R/R-3.1.3/library/Rcpp/include/Rcpp/protection/Armor.h:38:23: warning: inline
function 'Rcpp::Armor<T>& Rcpp::Armor<T>::operator=(const U&) [with U = SEXPREC
*, T = SEXPREC*, Rcpp::Armor<T> = Rcpp::Armor<SEXPREC*>]' used but never defined
[enabled by default]
g++ -m64 -IC:/R/R-3.1.3/include -IC:/R/R-3.1.3/include/x64 -IC:/R/R-3.1.3/librar
y/Rcpp/include -IC:/R/R-3.1.3/library/RInside/include -O2 -Wall -mtune=core2 -Wa
ll -s rinside_sample2.cpp -LC:/R/R-3.1.3/bin/x64 -lR -lm -LC:/R/R-3.1.3/bin
/x64 -lRblas -LC:/R/R-3.1.3/bin/x64 -lRlapack "C:/R/R-3.1.3/library/RInside/lib/
x64/libRInside.a" -o rinside_sample2
g++ -m64 -IC:/R/R-3.1.3/include -IC:/R/R-3.1.3/include/x64 -IC:/R/R-3.1.3/librar
y/Rcpp/include -IC:/R/R-3.1.3/library/RInside/include -O2 -Wall -mtune=core2 -Wa
ll -s rinside_sample3.cpp -LC:/R/R-3.1.3/bin/x64 -lR -lm -LC:/R/R-3.1.3/bin
/x64 -lRblas -LC:/R/R-3.1.3/bin/x64 -lRlapack "C:/R/R-3.1.3/library/RInside/lib/
x64/libRInside.a" -o rinside_sample3
g++ -m64 -IC:/R/R-3.1.3/include -IC:/R/R-3.1.3/include/x64 -IC:/R/R-3.1.3/librar
y/Rcpp/include -IC:/R/R-3.1.3/library/RInside/include -O2 -Wall -mtune=core2 -Wa
ll -s rinside_sample4.cpp -LC:/R/R-3.1.3/bin/x64 -lR -lm -LC:/R/R-3.1.3/bin
/x64 -lRblas -LC:/R/R-3.1.3/bin/x64 -lRlapack "C:/R/R-3.1.3/library/RInside/lib/
x64/libRInside.a" -o rinside_sample4
g++ -m64 -IC:/R/R-3.1.3/include -IC:/R/R-3.1.3/include/x64 -IC:/R/R-3.1.3/librar
y/Rcpp/include -IC:/R/R-3.1.3/library/RInside/include -O2 -Wall -mtune=core2 -Wa
ll -s rinside_sample5.cpp -LC:/R/R-3.1.3/bin/x64 -lR -lm -LC:/R/R-3.1.3/bin
/x64 -lRblas -LC:/R/R-3.1.3/bin/x64 -lRlapack "C:/R/R-3.1.3/library/RInside/lib/
x64/libRInside.a" -o rinside_sample5
g++ -m64 -IC:/R/R-3.1.3/include -IC:/R/R-3.1.3/include/x64 -IC:/R/R-3.1.3/librar
y/Rcpp/include -IC:/R/R-3.1.3/library/RInside/include -O2 -Wall -mtune=core2 -Wa
ll -s rinside_sample6.cpp -LC:/R/R-3.1.3/bin/x64 -lR -lm -LC:/R/R-3.1.3/bin
/x64 -lRblas -LC:/R/R-3.1.3/bin/x64 -lRlapack "C:/R/R-3.1.3/library/RInside/lib/
x64/libRInside.a" -o rinside_sample6
g++ -m64 -IC:/R/R-3.1.3/include -IC:/R/R-3.1.3/include/x64 -IC:/R/R-3.1.3/librar
y/Rcpp/include -IC:/R/R-3.1.3/library/RInside/include -O2 -Wall -mtune=core2 -Wa
ll -s rinside_sample7.cpp -LC:/R/R-3.1.3/bin/x64 -lR -lm -LC:/R/R-3.1.3/bin
/x64 -lRblas -LC:/R/R-3.1.3/bin/x64 -lRlapack "C:/R/R-3.1.3/library/RInside/lib/
x64/libRInside.a" -o rinside_sample7
g++ -m64 -IC:/R/R-3.1.3/include -IC:/R/R-3.1.3/include/x64 -IC:/R/R-3.1.3/librar
y/Rcpp/include -IC:/R/R-3.1.3/library/RInside/include -O2 -Wall -mtune=core2 -Wa
ll -s rinside_sample8.cpp -LC:/R/R-3.1.3/bin/x64 -lR -lm -LC:/R/R-3.1.3/bin
/x64 -lRblas -LC:/R/R-3.1.3/bin/x64 -lRlapack "C:/R/R-3.1.3/library/RInside/lib/
x64/libRInside.a" -o rinside_sample8
g++ -m64 -IC:/R/R-3.1.3/include -IC:/R/R-3.1.3/include/x64 -IC:/R/R-3.1.3/librar
y/Rcpp/include -IC:/R/R-3.1.3/library/RInside/include -O2 -Wall -mtune=core2 -Wa
ll -s rinside_sample9.cpp -LC:/R/R-3.1.3/bin/x64 -lR -lm -LC:/R/R-3.1.3/bin
/x64 -lRblas -LC:/R/R-3.1.3/bin/x64 -lRlapack "C:/R/R-3.1.3/library/RInside/lib/
x64/libRInside.a" -o rinside_sample9
g++ -m64 -IC:/R/R-3.1.3/include -IC:/R/R-3.1.3/include/x64 -IC:/R/R-3.1.3/librar
y/Rcpp/include -IC:/R/R-3.1.3/library/RInside/include -O2 -Wall -mtune=core2 -Wa
ll -s rinside_test0.cpp -LC:/R/R-3.1.3/bin/x64 -lR -lm -LC:/R/R-3.1.3/bin/x
64 -lRblas -LC:/R/R-3.1.3/bin/x64 -lRlapack "C:/R/R-3.1.3/library/RInside/lib/x6
4/libRInside.a" -o rinside_test0
g++ -m64 -IC:/R/R-3.1.3/include -IC:/R/R-3.1.3/include/x64 -IC:/R/R-3.1.3/librar
y/Rcpp/include -IC:/R/R-3.1.3/library/RInside/include -O2 -Wall -mtune=core2 -Wa
ll -s rinside_test1.cpp -LC:/R/R-3.1.3/bin/x64 -lR -lm -LC:/R/R-3.1.3/bin/x
64 -lRblas -LC:/R/R-3.1.3/bin/x64 -lRlapack "C:/R/R-3.1.3/library/RInside/lib/x6
4/libRInside.a" -o rinside_test1
g++ -m64 -IC:/R/R-3.1.3/include -IC:/R/R-3.1.3/include/x64 -IC:/R/R-3.1.3/librar
y/Rcpp/include -IC:/R/R-3.1.3/library/RInside/include -O2 -Wall -mtune=core2 -Wa
ll -s rinside_test2.cpp -LC:/R/R-3.1.3/bin/x64 -lR -lm -LC:/R/R-3.1.3/bin/x
64 -lRblas -LC:/R/R-3.1.3/bin/x64 -lRlapack "C:/R/R-3.1.3/library/RInside/lib/x6
4/libRInside.a" -o rinside_test2
但是当我尝试其中一个例子时，说:
#include <RInside.h> // for the embedded R via RInside
int main(int argc, char *argv[]) {
RInside R(argc, argv); // create an embedded R instance
R["txt"] = "Hello, world!n"; // assign a char* (string) to 'txt'
R.parseEvalQ("cat(txt)"); // eval the init string, ignoring any returns
exit(0);
}
给出如下错误:
# Rcpp::sourceCpp('C:/R/R-3.1.3/library/RInside/examples/standard/rinside_sample0.cpp')
g++ -m64 -I"C:/R/R-31~1.3/include" -DNDEBUG -I"C:/R/R-3.1.3/library/Rcpp/include" -I"C:/R/R-3.1.3/library/RInside/examples/standard" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c rinside_sample0.cpp -o rinside_sample0.o
rinside_sample0.cpp:10:74: fatal error: RInside.h: No such file or directory
compilation terminated.
make: *** [rinside_sample0.o] Error 1
Warning message:
running command 'make -f "C:/R/R-31~1.3/etc/x64/Makeconf" -f "C:/R/R-31~1.3/share/make/winshlib.mk" SHLIB_LDFLAGS='$(SHLIB_CXXLDFLAGS)' SHLIB_LD='$(SHLIB_CXXLD)' SHLIB="sourceCpp_78644.dll" WIN=64 TCLBIN=64 OBJECTS="rinside_sample0.o"' had status 2
Error in Rcpp::sourceCpp("C:/R/R-3.1.3/library/RInside/examples/standard/rinside_sample0.cpp") :
Error 1 occurred building shared library.
我认为它可能缺少一些依赖，所以我添加了// [[Rcpp::depends(RInside)]]，这也没有帮助，错误如下所列:
# Rcpp::sourceCpp('C:/R/R-3.1.3/library/RInside/examples/standard/rinside_sample0.cpp')
g++ -m64 -I"C:/R/R-31~1.3/include" -DNDEBUG -I"C:/R/R-3.1.3/library/Rcpp/include" -I"C:/R/R-3.1.3/library/RInside/include" -I"C:/R/R-3.1.3/library/RInside/examples/standard" -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -mtune=core2 -c rinside_sample0.cpp -o rinside_sample0.o
g++ -m64 -shared -s -static-libgcc -o sourceCpp_73309.dll tmp.def rinside_sample0.o -Ld:/RCompile/CRANpkg/extralibs64/local/lib/x64 -Ld:/RCompile/CRANpkg/extralibs64/local/lib -LC:/R/R-31~1.3/bin/x64 -lR
rinside_sample0.o:rinside_sample0.cpp:(.text.startup+0x9b): undefined reference to `RInside::RInside(int, char const* const*, bool, bool, bool)'
rinside_sample0.o:rinside_sample0.cpp:(.text.startup+0xe4): undefined reference to `RInside::operator[](std::string const&)'
rinside_sample0.o:rinside_sample0.cpp:(.text.startup+0x16b): undefined reference to `RInside::parseEvalQ(std::string const&)'
rinside_sample0.o:rinside_sample0.cpp:(.text.startup+0x1cc): undefined reference to `RInside::~RInside()'
collect2: ld returned 1 exit status
Error in Rcpp::sourceCpp("C:/R/R-3.1.3/library/RInside/examples/standard/rinside_sample0.cpp") :
Error occurred building shared library.
希望有人有一些有价值的见解分享!由于
错误非常明显:RInside.h: No such file or directory
你需要弄清楚为什么RInside头目录的-I....指令没有通过，或者该目录是否消失了，或者…
这些构建指令已经有几年的历史了，并且经过了相当好的测试:它们通常可以工作。
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